BioMCP-TS

local MCP server

Installation

Terminal

claude mcp add biomcp-ts -e ANALYSIS_BIOWASM=... -e ANALYSIS_R=... -e DB_TYPE=... -e NCBI_API_KEY=... -e S2_API_KEY=... -e OPENFDA_API_KEY=... -e ONCOKB_TOKEN=... -e DISGENET_API_KEY=... -- npx -y biomcp

Run in your project folder. Add --scope user to use it everywhere.

Claude Desktop, Cursor & other clients

Add to claude_desktop_config.json or .cursor/mcp.json.

{
  "mcpServers": {
    "biomcp-ts": {
      "command": "npx",
      "args": [
        "-y",
        "biomcp"
      ],
      "env": {
        "ANALYSIS_BIOWASM": "...",
        "ANALYSIS_R": "...",
        "DB_TYPE": "...",
        "NCBI_API_KEY": "...",
        "S2_API_KEY": "...",
        "OPENFDA_API_KEY": "...",
        "ONCOKB_TOKEN": "...",
        "DISGENET_API_KEY": "..."
      }
    }
  }
}

Fill in the environment variables with your own credentials.

Summary

Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.

Questions

BioMCP-TS is a local MCP server distributed as the npm package biomcp.

Run: claude mcp add biomcp-ts -e ANALYSIS_BIOWASM=... -e ANALYSIS_R=... -e DB_TYPE=... -e NCBI_API_KEY=... -e S2_API_KEY=... -e OPENFDA_API_KEY=... -e ONCOKB_TOKEN=... -e DISGENET_API_KEY=... -- npx -y biomcp

Run: codex mcp add biomcp-ts --env ANALYSIS_BIOWASM=... --env ANALYSIS_R=... --env DB_TYPE=... --env NCBI_API_KEY=... --env S2_API_KEY=... --env OPENFDA_API_KEY=... --env ONCOKB_TOKEN=... --env DISGENET_API_KEY=... -- npx -y biomcp

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